Spatial Analysis in Macroecology

It’s my turn to teach a lesson next week for the stats class I’m taking this semester (everyone has to do one; my topic is analyzing spatial data). This class was supposed to focus on SAS, but so far we’ve done almost nothing in SAS (which is fine with me since I don’t really care that much about learning SAS at this moment; I think JMP will be fine for most of my thesis needs). Especially since it looks like next week I might not do anything with SAS at all; instead, my professor wants me to play around with a program called SAM (Spatial Analysis in Macroecology), so I did a bit of that this evening.

And so far it looks pretty cool! I think I might be able to do some of the things I planned to do in ArcGIS in SAM instead, and a bit more easily. We shall see. It took me all evening to import a data set (for a really stupid reason I should have caught a lot sooner, but OH WELL :D. I thought it was a Mac to PC problem, and part of it was, but mostly it was that I had a numeric value in one of my column labels and apparently the program hates that).

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ANYHOODLE there they are. Those are ALL the nests we’ve found for this particular population of turtles in six years of field research. (Including viable nests, nest attempts, and predated nests). This isn’t the data set I’ll use for the meat of my analysis; I’m just going to use these to calculate a mean nest distance value for this population. But this was a good place to start with SAM, I think. Tomorrow, I’ll play around with this a bit more and see what cool stuff I can do. For now though, I like it. And I guess I can put together some sort of presentation about it, assuming this is what my professor decides he wants me to teach. Even if he ends up having me do stuff in JMP (or even SAS), it’s okay – I’m glad to be having the opportunity to learn a bit about SAM. I think it might be really useful to me down the road.

A Nice Thing Happened Today . . .

Another nice thing happened at school today when I ran into one of my former students. When he was in my class, he’d asked me to write a letter of recommendation for him, to accompany his application for a reasonably prestigious scholarship. I was more than happy to do so; he is an excellent student and an all around lovely person. Well, he GOT the scholarship, and the Chancellor of the university told him that the letter I wrote him was crucial in the decision they made to award him the scholarship. It was a really good feeling to know I legit helped something good happen for this young man. Also, he gave me a hug. I love getting hugs from former students. It just makes me happy.

Today Was One of Those Days

So, sometimes I realize that I just really enjoy teaching. Today was one of those days. It was an easy lab, from the teaching standpoint. They worked in small groups to discuss questions from readings about influenza and prion diseases; mostly, all I had to do was wander around and answer questions and clarify things and make sure they were on the right track in finding the answers. But of course, sometimes I just pull up a chair and jump into their discussions, and it’s just SO COOL. There is some amazing knowledge in their brains, and it’s wonderful to hear them make connections and add new information to the discussions. (Like the guy who told us the whole lifecycle of toxoplasmosis, and you could just tell he thought it was SUPER COOL). And they decided that prions are basically zombie brain cells, which is scarily accurate, really.

I did lecture a bit, about influenza pandemics, and the thing that was REALLY COOL is that when I tried to get their attention, and they didn’t quiet down right away, my usual technique is to just stop talking (instead of trying to shout over them; as long as a couple of people realize I want the class’ attention, eventually they’ll get the hint and shush the others). But tonight, when I stopped talking? They totally got the hint right away, and I had silence in, like, three seconds. THIS IS FABULOUS. It feels like a sign of respect, and I am grateful for that. And they seemed interested in the discussion and AHHHH it was just really cool.

And someone made an appointment to come see me today about some stuff she missed, and that was lovely (I’m one of the freaks who LOVES it when students come to my office hours. YES THAT IS WHY I AM HERE! LET ME HELP YOU)! So, yeah. It was a good day.

Baby King Snake

Few things feel better than a hot shower after three days in the field. It was a good three days, though. Found a total of eight turtles, and the most adorable baby king snake ever. I have never seen a king snake this small before; it was SO TINY AND SO PRECIOUS and really chill about being handled. So beautiful. I’m going to keep checking this location every time I go by; hopefully I’ll be able to see this precious baby again. Photos taken in Lake County, California.

Graduate Showcase

My presentation at today’s Graduate Showcase went really well! I’m posting the slides here, in case anyone is interested. It only hits on two of my research questions, and all the stats were removed, as this was geared toward a non-scientific audience. Still, it should give an idea about the focus of my research.

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Forensics Lab

I had such a good time teaching lab today. It was our “forensics” lab, where we talk about DNA fingerprinting techniques. (Specifically restriction fragment analysis and PCR). We do two activities – a “paternity test,” where students analyze a “gel” with the mother, child, and four possible fathers, to determine which father is most likely to be the biological dad. Then we try and solve a murder by comparing electrophoresis results for a whole bunch of suspects and comparing them to “blood” found at the crime scene that doesn’t match the victim. It’s the kind of lab that can be super fun or really dull, and today was super fun.

Also, I totally geeked out while teaching it. First, Taq DNA polymerase is just COOL! (It’s what allows us to take small samples of DNA and duplicate them enough to run tests. So much of the stuff we see on NCIS and every other crime show on the planet? POSSIBLE BECAUSE OF TAQ). It’s from a bacteria that lives in hotsprings like the ones at Yellowstone, and I sort of geeked out about how awesome biology is because of cool stuff like this. (There might have been some bouncing).

Then one of my students asked me how it was possible to get DNA from dried up tears, and that got us onto the topic of thousands of years old DNA extracted from frozen mammoths (AND FROM DINOSAUR BLOOD IN MOSQUITOS IN AMBER THAT IS REAL HUSH I BELIEVE IN IT AND I WILL HAVE A T. REX AS A PET SOMEDAY). So, we had a fun conversation about mammoths (and also about T. rex, because it’s possible I literally bounced up and down even more than I had before, and told them how much I really want a T. rex as a pet, even if it ended up eating me. And, I’m pretty sure they understood I WAS NOT JOKING). Then one of my students mentioned the possibility that T. rex had feathers, and I put that discussion off (because it was a bit off-topic) … but then the COOLEST thing happened.

After I dismissed the class, I brought up the subject of T. rex again with the student who had asked (and I won’t go into details here, but I’ll just say that the current “birds evolved from dinosaurs” theory has some GAPING holes, and should in no way be considered an absolute at this point in time) … ANYWAY … I started talking about this, and about a third of the class just STAYED TO LISTEN! They could have walked out, I expected them to walk out, but a bunch of them stopped, and stood around and they were totally interested in this little paleontology discussion we had and IT MADE ME SO HAPPY! Because I really did geek out at them quite a lot today, and they don’t seem to mind. If anything, I think it helps them get excited about the subject.

And I realized that THIS, really, is the best thing I can give them. Sure, they’ll learn some bits and pieces of biology from me in class, and hopefully remember at least some of it into the future. But if I can do something that helps THEM get as excited about science as I am, THAT is the real gift. And they probably won’t geek out about the same things I do, but that doesn’t matter, as long as they get the idea that it’s okay to geek out about SOMETHING. And holy crap, biology has an ENDLESS SPECTRUM of things that are geek-out worthy. Because biology is just F-ING COOL!

I think that might be my true calling. To help at least some of my students discover just how much they actually love biology, and see that it’s fine to express that. (Although I don’t expect all of them to bounce up and down about dinosaurs. But if they decide to do that, they will have my FULL SUPPORT).

So, yeah. Lab today was awesome. Oh, and I also told one of my students “I LOVE YOU,” because when I wrote “Thermus aquaticus” on the board, and asked them what I’d done wrong HE KNEW IT SHOULD HAVE BEEN ITALICIZED OR UNDERLINED. I must be doing something right.

Student Artwork

In the labs I teach, we give weekly quizzes, and I encourage my students to do artwork for me (and I give a tiny bit of extra credit to any student who draws something for me on his or her quiz). I’m not picky about drawings; stick figures count the same as something more realistically drawn. Sometimes, however, I find that students have drawn tiny little masterpieces for me. This semester, one student in particular, whom I shall call Ms. B, drew the most amazing turtles for me, almost every week. Here are a few of them. AREN’T THESE THE MOST ADORABLE THINGS YOU HAVE EVER SEEN????? Oh yes. Encouraging my students to draw things for me was a very, very good idea.